Unlockable - Unlockable Characters | |
| Ukon | Complete 5 Missions |
| Tayuya | Complete 10 Missions |
| Iruka | Complete 15 Missions |
| Mizuki | Complete 20 Missions |
| Akamaru | Complete 25 Missions |
| Kimimaro | Complete 30 Missions |
| Karasu | Complete 35 Missions |
| Haku | Complete 40 Missions |
| Zabuza | Complete 45 Missions |
| Anko | Complete 50 Missions |
| Itachi | Complete 55 Missions |
| Orochimaru | Complete 65 Missions |
| Tsunade | Complete 75 Missions |
| Sarutobi | Complete 85 Missions |
| Awakened Hinata | Complete 100 Missions |
| Sasuke: Cursed Seal 2 | Complete 120 Missions |
| Kisame | Beat "Strongest Rival" with Gai. |
Unlockable - Some things to unlock | |
| Shadow Mode | Play survival 20 times(go in and die, exiting wont work) |
| Difficulty 4 | unlock shadow mode then beat B-Rank mission: beat 50 shadow, A-Rank mission: beat 100 shadow, and S-Rank mission: beat 200 shadow |
| Mission Mode | Beat Story Mode part 1 |
| Kyuubi 2 Naruto | Beat S-Rank mission Strongest Rival Kyuubi 2 Naruto(using CS2 Sasuke) Comes available after unlocking CS2 Sasuke |
| Kabuto | Beat S-Rank Mission Strongest Rival Kabuto(using Tsunade) Comes availabe after unlocking Tsunade |
| Damage Level 4 | Beat the S-rank mission where you have to do 30 Super KO's. |
Easter Egg - GNT 3 savegame | |
| If you have a GNT3 Savegame in your Memory Card, you will start the game with omake section unlocked, and all the VS handicaps. | |
